modlab^®

Type III secretion system effector prediction

Preliminary Trial Version

Predicts the existence of type III secretion system (T3SS) signals in amino acid sequences.

Please note:

• Maximum 50 sequences per submission.
• Sequences shorter than the C-terminal cutoff are not analysed.
• Sequence identifiers should be unique.
• Default parameters correspond to the publication (see below). Change with care.
• The actual calculation might take some time, do not close this window meanwhile.
• Only standard amino acid codes are supported (ARNDCQEGHILKMFPSTWYV).

More information can be found here:

Loewer M, Schneider G (2009) Prediction of Type III Secretion Signals in Genomes of Gram-negative Bacteria, submitted manuscript.

Please cite this reference if you publish results obtained via this webserver.

Submission form

Prediction method:

Neural Network
Support Vector Machine

Sequence truncation (residue position):

N terminal:

C terminal:

Neural network threshold:

Enter amino acid sequence(s) in FASTA format:

SVM training by SVM^light

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