gecco!® / software
The modlab-team develops software tools for bio- and cheminformatics applications.
Our gecco!® server provides public access to these tools, some of which
can be downloaded, others come with an own web interface. Note that some
applications are provided as "demo" tools, some as full versions.
Different licenses and usage conditions may be valid. All software on gecco!® is
provided "as is", and any express or implied warranties are disclaimed
-- please read our legal disclaimer and copyright status.
Please report any difficulties you encounter when using these tools to the respective developer or the modlab webmaster.
If you wish to publish results obtained by using our free software, please cite the respective publication. Thank you!
Copyright © 2006-2008, Johann Wolfgang Goethe-Universität, Frankfurt am Main, Germany. All rights reserved.
Descriptors
CATS light - Chemically Advanced Template Search
LIQUID - fuzzy pharmacophore models based on trivariate Gaussians
Classification / Prediction
ISOAK - a molecular graph kernel based on iterative graph similarity and optimal assignments
HierarchicalKmeans - hierarchical clustering of and navigating in very large compound libraries
PATS - prediction of apicoplast targeted sequences of Plasmodium falciparum
PlasMit - prediction of mitochondrial transit peptides in Plasmodium falciparum
RankIt - retrospective and prospective screening
SVM-DrugLikeness - predictions of drug likeness based on SVM trained model
SVMTurn - a method for the prediction of regular turn regions in proteins
NtraC - Long Signal Peptide Analysis
T3SS_prediction - Type III secretion system effector prediction
ProBinder - Protein-Protein Docking
Miscellaneous
ChemSpaceShuttle light - data mining by classification, projection, and 3D visualization
Euclidean Distance Calculator - calculates euclidean distance between two tab-separated descriptors
H-BloX - calculate and visualize the Shannon information or relative entropy of sequence alignment blocks
MaxMinSelection light - perform subset selection from a compound library
MQL - Molecular Query Language
PocketPicker - Binding Site Prediction
SMILIB - create combinatorial libraries in SMILES format
Visualization
PsoVis - a visualization tool for Particle Swarm Optimization (PSO)
SOMMER - Self-Organizing Map Maker for Education and Research